Gene putatively regulated by attenuation in B_japonicum
Characteristics of the secondary structures
Terminator: Distance to gene:157 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G=-24.10 kcal/mol
Antiterminator: Size=59 nt. Delta G=-20.20 kcal/mol
Anti-antiterminator: Size=25 nt. Delta G=-10.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TGTCGACCCGCCAGTCGATCGCGGTCTCCGCGCTGTCGCTGGCCAACCAGTCGCAGCA
GAGCGTGCTCCAGCTGCTCCGCTAGtaagtaactgaaataacttggtaaaatagagcggcggggttttgtgccccgccgctt
ttttgcgtccggaggcgggcaggggcgttcattcgccattaaccctatcgcttaaaccggcgttaaccatactttaaaggacacctcctaaaactggacc
aaagcccgctttcgagaccgcgcggccgattcgtatccggttcaagaggaagactcgccaATG
bll5843
Gene: bll5843 GI: 27380954 BI number: bll5843 GOG: ------- Description:
ga
t a
c a
a t
a a
ta
gc
at
at
tg
G g
At
Ta
| a
| a
C a
G t
C a t
CC Cg t g
T A Ta t t
CG Cg tg
GC Gc gc
T | Tg gc
GT Cg gc
CG Gc gc
GC A | cg
AT Cg gc
GC Cg gc
A C Tg cg
CG Cg gc
GC Gt at
tttttgcgtccggaggcgggcaggggcgttcattcgccattaaccctatcgcttaaaccggcgttaaccatactttaaaggacacctcctaaaactggaccaaagcccgctttcgagaccgcgcggccgattcgtatccggttcaagaggaagactcgccaATG
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