Gene putatively regulated by attenuation in B_japonicum
Characteristics of the secondary structures
Terminator: Distance to gene:101 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-19.70 kcal/mol
Antiterminator: Size=45 nt. Delta G= -4.76 kcal/mol
Anti-antiterminator: Size=48 nt. Delta G= -8.37 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
cactggcagaatgccatcatcgaaacgagtttggttcggcccgcgcgggacaatccgcggcgggctttttcatgtccacctggtgtgacgacaatttcgt
tcaacacaggatttgactcgtcgggcaagacaccggcagaatgacatcatcgagacgagtttgattgacccgcgcggagagcatccgccgcgggtttttt
cgttctcgatcggaatcggacggcggcaacgcattgcggccacgcactcgacaaacctggagcgccgatcggcgcgccgtcgtccgaaccattgctggcc
GTG
bll6102 --- bsl6101
Gene: bll6102 GI: 27381213 BI number: bll6102 GOG: ------- Description: -
Gene: bsl6101 GI: 27381212 BI number: bsl6101 GOG: ------- Description:
ag
a a
c c
g a
gc
gc
cg
tg
gc g
c a a a
t | gc
c | cg
a | ta
g | a g
t | c t
t | t t
t | at
a | cg g
g | | a a c
g | a t g a
a | g t at
c | t g gc
a | a a gc
c | a c cg
a | g c | c
a | a c gc
cg cg cg
ta gc gc
ta | g cg
gt gc cg
cg cg cg
ta cg at
tttttcgttctcgatcggaatcggacggcggcaacgcattgcggccacgcactcgacaaacctggagcgccgatcggcgcgccgtcgtccgaaccattgctggccGTG
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