Gene putatively regulated by attenuation in B_melitensis_I

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:33 nt.     Distance to run of Ts=2 nt.   Size=23 nt.     Delta G= -9.20 kcal/mol
Antiterminator: Size=33 nt.     Delta G= -9.20 kcal/mol
Anti-antiterminator:   Size=55 nt.     Delta G=-14.55 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCCGGGTGGTAGTGGGGCCTCAGGCCCGGCTTGCCATTATCCCTGCCCCCGGCAGCGA
TTGCGGCTTCGTAAAAGCGGTCCACTTCCGAACGCGTCCCGGCTGAAAAGGCCACATG
CAACACGCCTTCCAGTTTCGCGCCTTTCTGTGCTCCGATCCAGAATTCCGGCTTGCCA
TTTCGCCCGTAGCCAACCCAATCTCCGAATTCCATGGCATGGCCGATACCAAGCGGAG
ACAGCGCCGCATCATAAAATGCGCGCGACTTTTTCATATCCGCAATATTGAAACCGAT
ATGATCGAGCATG

    BMEI0163


Gene: BMEI0163     GI: 17986447     BI number: BMEI0163     GOG: -------     Description: Hypothetical Protei


 AA
C  C
C  C
G  C
A  A
T  A
G  T
C  C
C  T
C  C
 GC
 CG
 TA        CC
 TA       A  A
|  T      T  A
|  T      A  G
|  C       GC
|  C       CG
 TA        CG        TA
 AT       |  A      A  A
 CG       |  G      C  A
 CG       G  A       TA
 GC        GC        AT
 TA        TA        CG
|  T      |  G       GC
 TG       A  C      C  |
 CG        CG        CG
 GC        GC        GC
 GC        GC        CG
 CG        TG        GC
                        GACTTTTTCATATCCGCAATATTGAAACCGATATGATCGAGCATG
    ..................................................................................................................