                                                                        Gene putatively regulated by attenuation in B_melitensis_I

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:110 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-10.00 kcal/mol
Antiterminator: Size=48 nt.     Delta G=-19.51 kcal/mol
Anti-antiterminator:   Size=19 nt.     Delta G=-10.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGCCTGCGGCCTCCACGCCTCTTGTCATCCGTGCCCGAAGGCACGGTTGCCGAGATCA
AGAAGATGATGGTCGAACGCCGCGTGTAACCACGGCAATCGTTGGTCTTTTTAGTCCC
TGTCGCGCCAGAGGCGCTCCACGCCTCTTGTTTGCGTCTCTGTCGGCCTGGGGGCCTC
CGTGCCTCTTGGTTATTTACTTCTCTGCCGGGCCGAACGAAATCAAAAAGGGGAAGGG
TCAACCTTCCCCTTTTGCTATGTTCGGTCCGCGTTGTAGACTTGATCTCTTGAAGTGT
TTTCATATTTTTG

    BMEI0164 Gene: BMEI0164     GI: 17986448     BI number: BMEI0164     GOG: COG0346     Description: PROBABLE LACTOYLGLUTATHIONE LYAS             C           G  G           T  T           T  C           T  T           G  C           T  T           T  G           C  T           T  C            CG            CG            GC           C  C       CC            AT       T  G   C        CG       C  T T  C       CG        CG C  A       TG        GC GC        CG        GC CG       G  |       GT GC        CG        GC GC        GC        GT AT        GC       T  T GC        AT        CG AT        GC        CG                         TTATTTACTTCTCTGCCGGGCCGAACGAAATCAAAAAGGGGAAGGGTCAACCTTCCCCTTTTGCTATGTTCGGTCCGCGTTGTAGACTTGATCTCTTGAAGTGTTTTCATATTTTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG0346 Lactoylglutathione lyase and related lyases ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_melitensis_I                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:153 nt.     Distance to run of Ts=0 nt.   Size=17 nt.     Delta G= -9.10 kcal/mol Antiterminator: Size=13 nt.     Delta G= -6.80 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case GGCCTGCGGCCTCCACGCCTCTTGTCATCCGTGCCCGAAGGCACGGTTGCCGAGATCA AGAAGATGATGGTCGAACGCCGCGTGTAACCACGGCAATCGTTGGTCTTTTTAGTCCC TGTCGCGCCAGAGGCGCTCCACGCCTCTTGTTTGCGTCTCTGTCGGCCTGGGGGCCTC CGTGCCTCTTGGTTATTTACTTCTCTGCCGGGCCGAACGAAATCAAAAAGGGGAAGGG TCAACCTTCCCCTTTTGCTATGTTCGGTCCGCGTTGTAGACTTGATCTCTTGAAGTGT TTTCATATTTTTG     BMEI0164 Gene: BMEI0164     GI: 17986448     BI number: BMEI0164     GOG: COG0346     Description: PROBABLE LACTOYLGLUTATHIONE LYAS             C           T  C   G       C  A A  A       GC CG        CG CG        GC GC        GC CG        AT GC        GC             TTGTTTGCGTCTCTGTCGGCCTGGGGGCCTCCGTGCCTCTTGGTTATTTACTTCTCTGCCGGGCCGAACGAAATCAAAAAGGGGAAGGGTCAACCTTCCCCTTTTGCTATGTTCGGTCCGCGTTGTAGACTTGATCTCTTGAAGTGTTTTCATATTTTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG0346 Lactoylglutathione lyase and related lyases ... can be seen here     ..................................................................................................................