Gene putatively regulated by attenuation in B_melitensis_I

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:190 nt.     Distance to run of Ts=0 nt.   Size=16 nt.     Delta G=-16.20 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -9.13 kcal/mol
Anti-antiterminator:   Size=20 nt.     Delta G= -6.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCGGATGAGCTGCTGGAAAAAGCCTGCATACGCATCCAGCGTTTCTGCGCCAGCCTGC
GCTGAtatcaatatcagcagaaaaatgaccaaggggccgcaaggcccctttttcatattcatcatTCAGGAATGGACAACCGG
GCAAAAGCCAAAAAAAAGCCAGACAAACGTCCGGCTTTTGAATTTTGAAGGTGCCATT
GAGGCAAACCTCCAGAGGGGAACACTCAGCCTGCGCAAAATGAGAGGAGGAAACGCAG
CACTGAGATGATCTTTATATGCATCCTGCCCATTGTTTTTGCAATG

    BMEI0514


Gene: BMEI0514     GI: 17986797     BI number: BMEI0514     GOG: -------     Description: Hypothetical Protei


           ca
          t  a
           at
           ta
           At
           Gc
           Ta
           Cg
           Gc
          |  a
          |  g
          |  a
          |  a
          |  a
          |  a
          |  a
          |  t
          |  g
 GC       |  a
A  C      |  c
C  T      |  c       ca
 CG       |  a      g  a
 GC       C  a       cg
 CG       G  g       cg
 GC        Tg        gc
T  T       Cg        gc
 CG        Cg        gc
 TA        Gc        gc
                        tttttcatattcatcatTCAGGAATGGACAACCGGGCAAAAGCCAAAAAAAAGCCAGACAAACGTCCGGCTTTTGAATTTTGAAGGTGCCATTGAGGCAAACCTCCAGAGGGGAACACTCAGCCTGCGCAAAATGAGAGGAGGAAACGCAGCACTGAGATGATCTTTATATGCATCCTGCCCATTGTTTTTGCAATG
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