Gene putatively regulated by attenuation in B_melitensis_I
Characteristics of the secondary structures
Terminator: Distance to gene:196 nt. Distance to run of Ts=0 nt. Size=20 nt. Delta G= -8.80 kcal/mol
Antiterminator: Size=64 nt. Delta G=-24.70 kcal/mol
Anti-antiterminator: Size=36 nt. Delta G= -8.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TACCGGCTTGAGCCGCAATGGGCCGCAGAGGAAGGGTTTACGGAAATCAGGCGCGAGC
TTGAGCTGAATGAATCCGTGCCGGAGGTGAAGGGAAGCCTCCTTTTTCGTGAATCCTT
TCTCAGGGAACCGAAGCTGCGGAAAATAACAGATTATCTGGCGAGAAACTGGGGCGGC
TGCGCCCGGCACAAGGACGCGCCCGCACAGAAGAAAGCTAAAAATCCATTTTAAatcaat
ggcttatgtttgatgtcaacttaaatcgcaatatttgattgaaatcaaggagcttttttaaagcgaGTG
BMEI0652
Gene: BMEI0652 GI: 17986935 BI number: BMEI0652 GOG: ------- Description: Hypothetical Protei
CG
G A
CG
GC
GT
AT
CG
TA
A G
A |
A |
GC
GT
CG
| A
| A
AT
GT TG
a G TA
gC TA
cG GT
gC GC
a A GC
a G | G
a A A T
tG A G GG
tG GC A G
tA GC A A
tA | G G A
tG A G TG
tG G A GC
cG A G GC
gT CG AT
aT GT GC
gT CG GC
TTTTTCGTGAATCCTTTCTCAGGGAACCGAAGCTGCGGAAAATAACAGATTATCTGGCGAGAAACTGGGGCGGCTGCGCCCGGCACAAGGACGCGCCCGCACAGAAGAAAGCTAAAAATCCATTTTAAatcaatggcttatgtttgatgtcaacttaaatcgcaatatttgattgaaatcaaggagcttttttaaagcgaGTG
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