Gene putatively regulated by attenuation in B_melitensis_II
Characteristics of the secondary structures
Terminator: Distance to gene:33 nt. Distance to run of Ts=3 nt. Size=19 nt. Delta G= -6.20 kcal/mol
Antiterminator: Size=64 nt. Delta G=-17.00 kcal/mol
Anti-antiterminator: Size=52 nt. Delta G=-16.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCCTGCACCAGATCTTCGGCTTCCGAAACTCTGCCGCCGAAAAGCCGCCGAACGAAAT
AGGCTTTCAGGAGACGCGAAAGCTCTTCAAGCAGCGTCCGGTAAGCCGCACTATTTCC
ATCCAGCGCCAACAACATCAGGGCCTTCAACCTCTCTTCATTAGAACGGGCCAGTCTC
GTTTCTCCTGTCGTCTTATTCGCGATAGGGACGAAAAAGGTTACATCCGCATCCCGAG
CGATCACatcggcgtgaacgatgtaacctttttcccctatccagcgaaacccttcctgtcacgcgccgATG
BMEII0073
Gene: BMEII0073 GI: 17988417 BI number: BMEII0073 GOG: NOG14731 Description: hypothetical protei
AC
T A
T T
GC
GC
A G
A C
A A A
T T A |
T T A |
C C G |
TG C |
GC AT
CG GC
TA GC
GT GC
TA A G
CG T A
CG A |
T | G |
C | CG
T | GC
TG CG
TA TA
GC T T
CG A C t
TA T A g g
C A T C c a
T A C a g a
G A T t gc
A A Gc cg
CG Cg ta
CG Tg at
GT Gc Cg
GT Tg At
aacctttttcccctatccagcgaaacccttcctgtcacgcgccgATG
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