Gene putatively regulated by attenuation in B_melitensis_II
Characteristics of the secondary structures
Terminator: Distance to gene:201 nt. Distance to run of Ts=1 nt. Size=22 nt. Delta G= -7.90 kcal/mol
Antiterminator: Size=47 nt. Delta G= -9.60 kcal/mol
Anti-antiterminator: Size=20 nt. Delta G= -5.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAGCAACTCGGCAACAATAACAGCACCGACCGTGCGCACGGCTGAtggcgtgttccagacttcatgt
tcaagattggcaggcactctgccgtcatttgttagttttaggcatctccgtttgtgacctccctcatgaaacgccggatatgctccatgatcaaggacca
gaaaatgactgaaacaagcttcgagaacagcctgccgccagaagatttactgattgttgctgcgagctgtgagccggaacaggaacatatgcgggaacca
gacttggtcagggatgcggcgttgaaacccgtcATG
BMEII0171 --- BMEII0172
Gene: BMEII0171 GI: 17988515 BI number: BMEII0171 GOG: NOG09790 Description: Hypothetical Cytosolic Protein
Gene: BMEII0172 GI: 17988516 BI number: BMEII0172 GOG: NOG08171 Description: hypothetical protei
ag
c a
c c
t t
t t
gc
ta
gt
cg
gt
gt
| c
| a
| a
| g a
ta c c
GA At g t
T t G t gc
C g T g at
G g Cg cg
Gc Gc gc
Cg G a gc
At C g t |
Cg A | tg
Gt Cg at
Gt Gc gc
atttgttagttttaggcatctccgtttgtgacctccctcatgaaacgccggatatgctccatgatcaaggaccagaaaatgactgaaacaagcttcgagaacagcctgccgccagaagatttactgattgttgctgcgagctgtgagccggaacaggaacatatgcgggaaccagacttggtcagggatgcggcgttgaaacccgtcATG
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