                                                                        Gene putatively regulated by attenuation in B_melitensis_II

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:148 nt.     Distance to run of Ts=2 nt.   Size=31 nt.     Delta G=-16.20 kcal/mol
Antiterminator: Size=14 nt.     Delta G= -7.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AATGTGGCCGTCATGCGTGAAACCGTTGCTTTCGGGAGACCCGTCCGATCAATCAGTT
CCTGATTGCCCAGCGACAGATCGTGCGGTGTGAAGCTGCGCAATATCTCCAACCCGCG
CACGAGCGCGCTCGAAACCTGCGCGGAATCTTTTTCCAGGTCCTGCGTCGTCGGTTTC
ATTCTCTTTTTCACGGTTTCTCCTGACGTTCTCAGTGCGAGTGCTAAAGGCAGAAAAA
GGGGGAGGTGACAAAAGTGAAATTTAATTCCATTTATATTGACGACTTCGATTTTGGT
TGTCAAtactATG

    BMEII0220 --- BMEII0221 --- BMEII0222 --- BMEII0223 --- BMEII0224 --- BMEII0225 Gene: BMEII0220     GI: 17988564     BI number: BMEII0220     GOG: COG0601     Description: OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB Gene: BMEII0221     GI: 17988565     BI number: BMEII0221     GOG: COG1173     Description: DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC Gene: BMEII0222     GI: 17988566     BI number: BMEII0222     GOG: COG0444     Description: OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD Gene: BMEII0223     GI: 17988567     BI number: BMEII0223     GOG: COG4608     Description: OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF Gene: BMEII0224     GI: 17988568     BI number: BMEII0224     GOG: COG1804     Description: formyl-coenzyme A transferase Gene: BMEII0225     GI: 17988569     BI number: BMEII0225     GOG: COG1012     Description: 6-OXOHEXANOATE DEHYDROGENAS            GC           C  G            GC            AT            GC            CG           |  A           |  A           |  A           |  C           |  C CG        AT A  A       CG CG        GC GC        CG CG        GC GC        CG CG        CG             AATCTTTTTCCAGGTCCTGCGTCGTCGGTTTCATTCTCTTTTTCACGGTTTCTCCTGACGTTCTCAGTGCGAGTGCTAAAGGCAGAAAAAGGGGGAGGTGACAAAAGTGAAATTTAATTCCATTTATATTGACGACTTCGATTTTGGTTGTCAAtactATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components ... can be seen here [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components ... can be seen here [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component ... can be seen here [E] COG4608 ABC-type oligopeptide transport system, ATPase component ... can be seen here [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase ... can be seen here [C] COG1012 NAD-dependent aldehyde dehydrogenases ... can be seen here     ..................................................................................................................