                                                                        Gene putatively regulated by attenuation in B_melitensis_II

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:154 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G= -6.40 kcal/mol
Antiterminator: Size=45 nt.     Delta G=-16.60 kcal/mol
Anti-antiterminator:   Size=47 nt.     Delta G=-12.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ACGCGCGCCACGATGCCCTCGACAATGATCGTGTCGGTTTCAAAGGGCAGGTGAGGTC
CATGCTGCTCATGAGCGCCCAGTGGCAGGACGACAATCATGTCGCTGTTCTGATCGCG
CAGATCGGTCATGTTTTTCTCGCTTTTTTGTTCGTTTAAGCCTTCAAGCCTAACCTTC
GTTAGCCAAGACAGCAActggcgcttgtcgtttcataaggcagataatattttaacttatagaaccgggcagggctgtcgatcgcgcg
acaagatgacgtcgtaacaaagtcgcaatgaggacgagGTG

    BMEII0310 --- BMEII0311 Gene: BMEII0310     GI: 17988655     BI number: BMEII0310     GOG: COG1846     Description: TRANSCRIPTIONAL REGULATOR, MARR FAMILY Gene: BMEII0311     GI: 17988656     BI number: BMEII0311     GOG: COG1846     Description: TRANSCRIPTIONAL REGULATOR, MARR FAMIL   G        TC A  C      A  A G  G       AT T  C       CG A  C       AT C  C       GC TA        CG CG       A  | G  T      G  | T  G       GC CG        AT GC        CG TA        GT         G A  |       GT       C  C CG       T  |      G  A CG        GC        CG TA        AT        TA GC        CG        AT |  G      |  A       GC G  A      |  T       TG A  C      C  C       CG G  A       CG       T  T TA        GC       T  | GT        CG        GC GC        GC        TA                         TGTTTTTCTCGCTTTTTTGTTCGTTTAAGCCTTCAAGCCTAACCTTCGTTAGCCAAGACAGCAActggcgcttgtcgtttcataaggcagataatattttaacttatagaaccgggcagggctgtcgatcgcgcgacaagatgacgtcgtaacaaagtcgcaatgaggacgagGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1846 Transcriptional regulators ... can be seen here [K] COG1846 Transcriptional regulators ... can be seen here     ..................................................................................................................