                                                                        Gene putatively regulated by attenuation in B_melitensis_II

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:196 nt.     Distance to run of Ts=1 nt.   Size=29 nt.     Delta G=-14.70 kcal/mol
Antiterminator: Size=45 nt.     Delta G=-12.90 kcal/mol
Anti-antiterminator:   Size=52 nt.     Delta G=-10.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCGCCGTTTGCTCAAACAGTTCGAGCCAGCGGTCGAAATGCTCGTTCTCAAGGTTCAG
CGCCAGATGAGGCGGCATGGGGCGGCCATCATAGCCGCCGGTTTTTAGAATGACTGAT
GACCAGAATTCGCTGATCCGCGCAAGGTGGTGATCCCAGTCCTTTACCGTCCGGTTGA
AGATCGGGCCGATGATTTCGTCTTCACGTGCGCGGCCATAGAAAATTTCCACGAGCCT
GTCGATGGAGTCCCTGTCGATGGACGGATGTGGCTGGTTGATGAGAATGGTCATtatgtc
ctgccgggTTG

    BMEII0399 Gene: BMEII0399     GI: 17988744     BI number: BMEII0399     GOG: -------     Description: hypothetical protei   G C  A       AT T  A      G  G G  A      A  A GT        CG CG        CG GC        GC AT        CG C  C      G  | CG       A  | GT       C  | AT       T  |        G GC        TG       C  G C  T       GC        GC T  C      G  A       GC T  A      A  T      |  A G  A      A  |       GT A  G      C  |       GC CG        TG        TA AT        CG        AT AT        TG       |  A A  C       TG        CG C  |       GC        GC TA        CG        GC CG       T  |       CG GC        CG        GC TG        GC        GC                         GGTTTTTAGAATGACTGATGACCAGAATTCGCTGATCCGCGCAAGGTGGTGATCCCAGTCCTTTACCGTCCGGTTGAAGATCGGGCCGATGATTTCGTCTTCACGTGCGCGGCCATAGAAAATTTCCACGAGCCTGTCGATGGAGTCCCTGTCGATGGACGGATGTGGCTGGTTGATGAGAATGGTCATtatgtcctgccgggTTG     ..................................................................................................................