Gene putatively regulated by attenuation in B_melitensis_II
Characteristics of the secondary structures
Terminator: Distance to gene:0 nt. Distance to run of Ts=0 nt. Size=19 nt. Delta G=-14.00 kcal/mol
Antiterminator: Size=59 nt. Delta G= -9.25 kcal/mol
Anti-antiterminator: Size=49 nt. Delta G=-11.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CCAGGACGATTGGCATTCGCCCCGAACATCTTTCTGTCAGCCGCGAGAGCGGAACGTG
GAAAGGCAAGGTCATCCATGCCGAGCATCTGGGTGCCGATACGATCCTCTATGTCGAG
ACAGAAACGGCAGGTCTTGTCACTGCCCGCCTGTTCGGTGAGCAGCACTATAATGAAG
ATGATGTGATCTTCCTCACCCCGGAAGAAGGCAAGACCCATCGTTTCGATGAGGCAGG
CAAAGCGATCCGCTGAtcttctttggcataatcccacaattgaaaaccgcgcctgaccggcgcggtttTTG
BMEII0749
Gene: BMEII0749 GI: 17989094 BI number: BMEII0749 GOG: ------- Description: hypothetical protei
tt
c c
t t
At
Gt
Tg
Cg
Gc
| a
| t
| a
| a
T | t
T T | c
GC | c
CG | c
TA | a
AT | c
CG | a
| A | a
CG | t
CG | t
A C | g
G A | a
A G C a
A | C a
CG T a
GC A c
| A Gc
| A Cg a
G A Gc g c
A G A | t c
A C A | cg
G G A | cg
A A Cg gc
AT Gc cg
GC Gc gc
GC At cg
CG Cg cg
tttTTG
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