Gene putatively regulated by attenuation in B_melitensis_II
Characteristics of the secondary structures
Terminator: Distance to gene:42 nt. Distance to run of Ts=0 nt. Size=38 nt. Delta G=-14.37 kcal/mol
Antiterminator: Size=43 nt. Delta G= -9.90 kcal/mol
Anti-antiterminator: Size=57 nt. Delta G=-17.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCTGGCGTGATGATGTCTATGCTTTTGATGGCAAGGACTGGAAGGTGGCCGGCAAGCT
GCCGCGCGGTCTGGCCTATGGCGCAGCCTTCGATGCGCCGGGCGGTCTTCTGGTCGTG
GGCGGTGAAGATAGAGACGGCAAGGCCCGCAAGGAGGTTTTCCTCCTCAAATGGGATG
GCAAGGCCCTCTCGGTCGAAAACTGActtcgcagtggaaagagcgcttccatcgataccatttaaaccggaagcgttcttt
ttttgaaagcttggcgacgatgcttctttgcgttattgttccaaaATG
BMEII0855
Gene: BMEII0855 GI: 17989200 BI number: BMEII0855 GOG: ------- Description: hypothetical protei
A
A G
CG
GC
GC
T C
AT
GC
GT tt
GC c c
T | A g
A | Gc
A | Ta
A | Cg ca
C | At c t
T | A g a t
CG A | t t
CG A | a a
T T G | g a
C C Cg c a
CG Ta t c
TA G a a c
TA G | cg
TA C | cg
TA Ta ta
GC Cg ta
GT Ta cg
A G Cg gc
G A C c cg
Gc Cg gt
At Gc at
At Gt gc
tttttttgaaagcttggcgacgatgcttctttgcgttattgttccaaaATG
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