                                                                        Gene putatively regulated by attenuation in B_melitensis_II

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:179 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G=-12.80 kcal/mol
Antiterminator: Size=31 nt.     Delta G=-11.90 kcal/mol
Anti-antiterminator:   Size=57 nt.     Delta G=-14.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGTCAGGGTTTTCTGATCGATCTGGTAGCGGATACAATCGCGCAGGAAGGCGGATAT
GAGATTGATATGCGCATGTTGCCAATGATCCGCAGCTTGCGTCGGTCGTTGCGGATAT
TTTTGTTACTTCCGATGATATTCCTCACGGATACTGGGCGACAGATCTGTTTACCGAG
CAACTGGTCGCTGTCTGCACGCCTGCCTGCCGGGATGAGGAACTGAagacaagatcggtaccgttt
atcaagaatgaagccctggagctgacaggcgaatgtcgctggctgctctataagcaggaaTTG

    BMEII0901 Gene: BMEII0901     GI: 17989246     BI number: BMEII0901     GOG: COG0583     Description: TRANSCRIPTIONAL REGULATORY PROTEIN, LYSR FAMIL GA G  A A  G CG GC CG |  G |  A |  T |  A |  T |  G G  A CG TA AT AT CG |  A        G AT       T  A       TC TA       A  T      G  G AT       A  C       CG G  G      C  C       GT GC        CG       T  C CG        GC       T  | GC        TA        CG |  A       TG        GT |  T       GC        AT |  G      T  T       CG |  T       AT        GC AT        CG        CG TG        GC        CG GC        CG        TA GC        GT        AT                         ATTTTTGTTACTTCCGATGATATTCCTCACGGATACTGGGCGACAGATCTGTTTACCGAGCAACTGGTCGCTGTCTGCACGCCTGCCTGCCGGGATGAGGAACTGAagacaagatcggtaccgtttatcaagaatgaagccctggagctgacaggcgaatgtcgctggctgctctataagcaggaaTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG0583 Transcriptional regulator ... can be seen here     ..................................................................................................................