                                                                        Gene putatively regulated by attenuation in B_melitensis_II

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:82 nt.    Distance to gene:134 nt.     Distance to run of Ts=0 nt.   Size=22 nt.     Delta G= -6.80 kcal/mol
Antiterminator:    Distance from promoter:55 nt. Size=39 nt.     Delta G= -9.90 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: ttaact-gaaaat. It has a score value of 63.59 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ttaacttatggttcggcatgaacgaaaatggttcagctttaggagtaaaaccgaagatggggggcaatccattggcaaggttttgcgacgccaagatggg
gcattttcgtcatatcgcgcagcgacgtggtgtatttttctgctgcacgcgtcgaaactccgttaaaggggaacaattccatgcggtcgtttcttccgtt
cagccgaaaaataccctcacgccgaaccgtaacttaattcgtcaccacagcctaaacttgtaaggactgaaaaATG

    BMEII0980 --- BMEII0979 Gene: BMEII0980     GI: 17989325     BI number: BMEII0980     GOG: COG4221     Description: RIBITOL 2-DEHYDROGENASE Gene: BMEII0979     GI: 17989324     BI number: BMEII0979     GOG: COG1069     Description: D-RIBULOKINAS tt t  t a  c cg gt gc g  a gt ta at gc        gc a  |      a  g a  |      c  a c  |       gc cg        cg gc        gt cg        cg a  c       tg g  a       at cg        tg gc        at             atttttctgctgcacgcgtcgaaactccgttaaaggggaacaattccatgcggtcgtttcttccgttcagccgaaaaataccctcacgccgaaccgtaacttaattcgtcaccacagcctaaacttgtaaggactgaaaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG4221 Short-chain alcohol dehydrogenase of unknown specificity ... can be seen here [C] COG1069 Ribulose kinase ... can be seen here     ..................................................................................................................