                                                                        Gene putatively regulated by attenuation in B_melitensis_II

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:157 nt.     Distance to run of Ts=0 nt.   Size=37 nt.     Delta G=-12.70 kcal/mol
Antiterminator: Size=32 nt.     Delta G= -4.21 kcal/mol
Anti-antiterminator:   Size=37 nt.     Delta G=-13.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCATCGGTGACGCCTTCAGTCAGGATCTTGCGCACGAAAGCCTTGGCATAGGCCATGT
CTTCAAGGCCGAACGCCTTCATGGCGTAATTGAAGAGCCGCGTATCGGCCATGAAATC
ATCAACCGATTTCACATTGCCGATATTTTCCTTGTAATAGGCCGTTTCGCGCTCCACC
AGCGGCTCTTTTGAAACGCGCTGCAATGACCGCGTCATATTCGACGCGATCAGGCGAT
AGCTCGTCATCGTATCGACCATgcaaatgccccctgctgatatctgctctctttatgggaggccaagcTTG

    BMEII1109 --- BMEII1110 --- BMEII1111 --- BMEII1112 --- BMEII1113 Gene: BMEII1109     GI: 17989454     BI number: BMEII1109     GOG: COG1291     Description: CHEMOTAXIS MOTA PROTEIN Gene: BMEII1110     GI: 17989455     BI number: BMEII1110     GOG: COG1868     Description: FLAGELLAR MOTOR SWITCH PROTEIN FLIM Gene: BMEII1111     GI: 17989456     BI number: BMEII1111     GOG: -------     Description: hypothetical protein Gene: BMEII1112     GI: 17989457     BI number: BMEII1112     GOG: COG1886     Description: FLAGELLAR MOTOR SWITCH PROTEIN FLIN Gene: BMEII1113     GI: 17989458     BI number: BMEII1113     GOG: COG1536     Description: FLAGELLAR MOTOR SWITCH PROTEIN FLI   C T  A        T         A T  T      G  A      C  A CG       C  T      T  C CG        GC       A  C GC        CG        CG CG        CG        TA AT        GC        AT A  A      |  C       AT G  A      |  A       AT C  |      |  T       GC C  |      |  G       TA G  |      |  A      |  C G  |      |  A      |  A AT       |  A      A  T AT        AT       C  T CG        GC        CG TA       A  A       GC TA        AT        GC CG        GC        CG TA        TA        TA                         TATTTTCCTTGTAATAGGCCGTTTCGCGCTCCACCAGCGGCTCTTTTGAAACGCGCTGCAATGACCGCGTCATATTCGACGCGATCAGGCGATAGCTCGTCATCGTATCGACCATgcaaatgccccctgctgatatctgctctctttatgggaggccaagcTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [N] COG1291 Flagellar motor component ... can be seen here [N] COG1868 Flagellar motor switch protein ... can be seen here [NU] COG1886 Flagellar motor switch/type III secretory pathway protein ... can be seen here [N] COG1536 Flagellar motor switch protein ... can be seen here     ..................................................................................................................