Gene putatively regulated by attenuation in B_melitensis_II
Characteristics of the secondary structures
Terminator: Distance to gene:128 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-18.10 kcal/mol
Antiterminator: Size=48 nt. Delta G= -5.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GAAGGCTTCGCCATCACCCGGACCGGCAATGCCTATGCCGTGACGGATAATGACGGTG
TGGATGGAAGCAGCGGCGAAACGCAGTTCTTTTCAATCGGCAAGATCGATTAAgcctgcca
cctttctctcgtaaccgcttgaaacgccgcattcgcttggatgcggcgtttctttcgacgcctgcgataaaagcacgggagaaattttgcacaatcgccg
gtaacggcttgacgaaacgggcctctatcaatattggaacagccaagagagcaaccgactgatttgcttctctctcaggaaGGC
_v15
Gene: _v15 GI: _v15 BI number: _v15 GOG: ------- Description: tRNA-Cy
aa
t c
gc
cg
t c
c t
t t
cg
ta
ta
ta
c c
c g ct
a c g t
c c cg
cg tg
gc ta
ta at
| t cg
| t gc
c c cg
cg cg
gc gc
At cg
At at
ttctttcgacgcctgcgataaaagcacgggagaaattttgcacaatcgccggtaacggcttgacgaaacgggcctctatcaatattggaacagccaagagagcaaccgactgatttgcttctctctcaggaaGGC
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