Gene putatively regulated by attenuation in B_suis_1330_I
Characteristics of the secondary structures
Terminator: Distance to gene:149 nt. Distance to run of Ts=1 nt. Size=29 nt. Delta G= -7.70 kcal/mol
Antiterminator: Size=44 nt. Delta G= -6.40 kcal/mol
Anti-antiterminator: Size=39 nt. Delta G= -3.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ACCATGATTGATTAAtctgcatgtattggggtgggcggatagcggagctggtaaATGCAGCGCTACAGATTTGA
CGACAAGAGAATTCTGACAGAAGCGATTGTAGAACTTCTCAATCAGGGGATCGAACTT
GAAGACCTTGATCTTGTTTTAAGCCGGATCGGCCCGGTTGATCTTGATCTGATGCAGG
AATGCCTGATTGAAGTGTGGAACTACAATCATCCCGAATTGGCGGCCACACAGATGGC
TGCCTGAcgggataaaaggcagacgattacaaaggatcaggccaaggttttcTTG
BR0011
Gene: BR0011 GI: 23500927 BI number: BR0011 GOG: ------- Description: hypothetical protei
CG G
A A T T
GC T A
TA A G
TA G A
TG C A
| A GC
| G AT
| A AT
| A GC AC
| T AT A T
AT | C GT
GC | A CG
AT C A TA
CG AT | A
| A GC A G
| C TA G A
| A CG GC
| G TG GC
A A TG GT
TA | G AT
CG A A CG
GC AT TA
CG GC AT
CTTGTTTTAAGCCGGATCGGCCCGGTTGATCTTGATCTGATGCAGGAATGCCTGATTGAAGTGTGGAACTACAATCATCCCGAATTGGCGGCCACACAGATGGCTGCCTGAcgggataaaaggcagacgattacaaaggatcaggccaaggttttcTTG
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