Gene putatively regulated by attenuation in B_suis_1330_I
Characteristics of the secondary structures
Terminator: Distance to gene:86 nt. Distance to run of Ts=2 nt. Size=29 nt. Delta G= -9.10 kcal/mol
Antiterminator: Size=68 nt. Delta G=-16.25 kcal/mol
Anti-antiterminator: Size=49 nt. Delta G=-10.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GGCTTCGCGGGCTGCGGCCAGAGTGGTTTTCGGGTCTCCGGCAAGCTGGATGAACATA
TTGGAGAAATCAATGCCGCCAGTGATAAGGCCGATAATCGGCATGATGATATCATTGA
CGATGGAGTTGACGAGGCCACCGAACGCCCCGCCGATGATGACACCGATGGCCAGATC
GACCATATTGCCCTTCAGGGCGAATTCCTGGAATTCTTTTAACATaaagcctgtctccctcacgaat
gcggatcgcaggctgggccgtcatggctgcgatgcattcgtcaaaacaactggcgccaaATG
BR0317
Gene: BR0317 GI: 23501224 BI number: BR0317 GOG: ------- Description: hypothetical protei
CG
C A
G T
C G
C A
C T
TG C G
T A G A
A C C C
CG A A
TA A C
AT GC
TG CG
A G C A
G A AT
TG CG
AT CG
GT GC
TG GC TC
A A A A T A
C | G G CG
G | C A CG
GC AT CG
CG GC GC
TA TG TG
A | TA TA
A | GC | A
T | A C | T
A | G A | T
G | GT A C
CG TA T C
CG AT AT
GC GT CG
GC CG CG
AATTCTTTTAACATaaagcctgtctccctcacgaatgcggatcgcaggctgggccgtcatggctgcgatgcattcgtcaaaacaactggcgccaaATG
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