                                                                        Gene putatively regulated by attenuation in B_suis_1330_I

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:200 nt.     Distance to run of Ts=1 nt.   Size=37 nt.     Delta G=-13.70 kcal/mol
Antiterminator: Size=39 nt.     Delta G= -3.30 kcal/mol
Anti-antiterminator:   Size=40 nt.     Delta G=-13.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AGACGTGAATCCACATGGGCGAAGCTCGACGTGGAAAGGCATATTTCAGGATAGAATG
CACGATAACGCTGCGGCGCAATTTCGCCGCGGGCAACTTTTTCAAAAGCAGAGCGCAA
GAAAGCGGTGTTGCGCTCGTAAAGTTTGCACAAGGCGGCCACGGCTGCCTGCGCGTCG
CTAAAAACTTCCGGCTCCATCAGCGGAGGGGTTTTAATATCAGTCAAAAATGGATGTT
CGATTCGTTGCGTCATgacctagtatagcaaactccatgacggtggcatgatctgattatgcagttctTTG

    BR0624 --- BR0625 Gene: BR0624     GI: 23501511     BI number: BR0624     GOG: -------     Description: hypothetical protein Gene: BR0625     GI: 23501512     BI number: BR0625     GOG: -------     Description: hypothetical protei                      AT            GA       A  T   G       G  T      C  T T  G      A  A       GC T  T       CG        CG tG        TA        GC cG       T  |       GC tA       T  |       CG tA       A  |       GC g  A       TA        TG a  G       AT        CG cG        CG       G  | gC        GC       C  | tA       |  A      A  | aT       |  C      A  | tA       G  G      T  | |  T      A  A      A  | t  T      A  T      G  | aT       A  A      C  | gC       G  A      A  | tA        GC        CG cG        TG        GC tG        GC        TA                         ACTTTTTCAAAAGCAGAGCGCAAGAAAGCGGTGTTGCGCTCGTAAAGTTTGCACAAGGCGGCCACGGCTGCCTGCGCGTCGCTAAAAACTTCCGGCTCCATCAGCGGAGGGGTTTTAATATCAGTCAAAAATGGATGTTCGATTCGTTGCGTCATgacctagtatagcaaactccatgacggtggcatgatctgattatgcagttctTTG     ..................................................................................................................