Gene putatively regulated by attenuation in B_suis_1330_I
Characteristics of the secondary structures
Terminator: Distance from promoter:33 nt. Distance to gene:183 nt. Distance to run of Ts=0 nt. Size=18 nt. Delta G= -9.30 kcal/mol
Antiterminator: Distance from promoter:12 nt. Size=30 nt. Delta G= -7.30 kcal/mol
Anti-antiterminator: Size=36 nt. Delta G=-16.90 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgaca-accaat. It has a score value of 60.24 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgacatgaatgtcaccgttgcgaccaatcgtttccgaTTGGCGAATGGTTTTGGTGACAGTCTGGCGCGCGGG
CGTCGGTTTCTTGACCATGATGATCCATTCTATGCAGATTTGCCGTTAGAGCGGTTCC
TGTTTTAAcaaaatcgccggaaccgttctggagcccgaaccaaaagcatcatttgcacaccagcatggcggcttttggaacaggctataggtcc
gtgcggagtttaagatcgagttaccgccgcgcaggatacaaTTG
BR0711
Gene: BR0711 GI: 23501598 BI number: BR0711 GOG: ------- Description: hypothetical protei
tt
t c
gc
cg TG
ta G A
aT GC
aT TA
cG TG
cG T T
a | T |
gC GC CG
cG GT G G
g | TG CG
tA | G GC
tA A C CG
gT A G GT
cG GC GC
cG CG TG
aT GC CG
TTTCTTGACCATGATGATCCATTCTATGCAGATTTGCCGTTAGAGCGGTTCCTGTTTTAAcaaaatcgccggaaccgttctggagcccgaaccaaaagcatcatttgcacaccagcatggcggcttttggaacaggctataggtccgtgcggagtttaagatcgagttaccgccgcgcaggatacaaTTG
..................................................................................................................