Gene putatively regulated by attenuation in B_suis_1330_I

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:160 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G=-14.90 kcal/mol
Antiterminator: Size=37 nt.     Delta G=-12.80 kcal/mol
Anti-antiterminator:   Size=30 nt.     Delta G= -4.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gccagccttggcgaacaggcaataaaaaacgccgcttgaagcggcgttttgcaaagaggcaaacggatagaTTATTGATTTCCGGTTT
TGCTGTCACAGGAAGTTTTGCCGGAAGCCTGCCCTTGCTGCTTCTGGTTTGTTTCACT
TGCTTCAACCGCATTGCGGAATTCGGCCCACTCACGTTCATGACGGCGATATAGCTCA
TCGGAAACAGTCTGGATAGCCATTTTGATCCTCCGTTGATCTGTCTGCCAATTAGCAC
AGCCCGGCGAAAAACACCGCATCACaaacggtaagcgaTTG

    BR0719


Gene: BR0719     GI: 23501606     BI number: BR0719     GOG: -------     Description: hypothetical protei


           CA
          A  G
           CG
  T        TA
T  T      G  |       CT
A  C       TA       C  T
 GC        CG        CG
 TG        GT        GC
 TG       T  T      T  T
 AT       T  T      C  |
|  T      T  T       CG
T  T       TG        GC
T  T       GC        AT
a  G       GC        AT
 gC        CG        GC
 aT        CG        GT
 tG        TA        CG
 aT        TA        CG
 gC        TG        GT
                        TTGTTTCACTTGCTTCAACCGCATTGCGGAATTCGGCCCACTCACGTTCATGACGGCGATATAGCTCATCGGAAACAGTCTGGATAGCCATTTTGATCCTCCGTTGATCTGTCTGCCAATTAGCACAGCCCGGCGAAAAACACCGCATCACaaacggtaagcgaTTG
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