Gene putatively regulated by attenuation in B_suis_1330_I
Characteristics of the secondary structures
Terminator: Distance to gene:181 nt. Distance to run of Ts=0 nt. Size=17 nt. Delta G= -8.30 kcal/mol
Antiterminator: Size=46 nt. Delta G=-11.92 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ccggtgatagcgcatgttggagatagggtggaatgctgactgacgggttatctaaatgaacccgccaaagctgtcctctcgcgagagtaccgtacaccgg
cagcgaagcgctgtctttttcgcgtttaggccgcgcgtgacgctttttttacagcccgcatgggggagatgtgctggtcaaactaaatcgtcgagtggca
aagaatcaccacttttggtagcgatgcgacgggttaggacttagagcgaaaagtgaattttggggggactttgaaagcgaacattctatcaaccctctcg
GTG
BR0734
Gene: BR0734 GI: 23501621 BI number: BR0734 GOG: NOG10806 Description: conserved hypothetical protei
cg
g a
cg
ta
cg
| t
| a
| c
| c
| g
| t
| a
| c
| a
t c
c c
cg
tg
gc
ta a
cg a g
gc gc
a g cg
a a gc
a a at
c | cg
cg gt
gc gc
tttttcgcgtttaggccgcgcgtgacgctttttttacagcccgcatgggggagatgtgctggtcaaactaaatcgtcgagtggcaaagaatcaccacttttggtagcgatgcgacgggttaggacttagagcgaaaagtgaattttggggggactttgaaagcgaacattctatcaaccctctcgGTG
..................................................................................................................