                                                                        Gene putatively regulated by attenuation in B_suis_1330_I

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:203 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G= -7.80 kcal/mol
Antiterminator: Size=34 nt.     Delta G= -5.50 kcal/mol
Anti-antiterminator:   Size=52 nt.     Delta G= -9.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCAGTACGGCGCGGCGCAGGTACCGGAACGGGAACAGGAGTTGTTGGTTTCGATTTGA
CTTCGATATTTGGTTGCGGGGCAGGCTTTTCAGCCTGTTTTGCTAAAAGTCGCTTGCT
GGAGCGCTTTTGGACTGTGCGTTTTTTATATTTTTTGGCCTTCTGCGCATCCTGTTTC
AATATCCGCTCGATGAATGTCTGCGCTTTTGTGCTGCCTTGCCTGAAAAGACCTGGCG
CCAGGAAAAAAACCAATGTCAGACAGACCATGATGAATATTCGTGAAGGCCGGGAAAA
AGACAACACCATG

    BR0829 Gene: BR0829     GI: 23501716     BI number: BR0829     GOG: -------     Description: hypothetical protei GG A  A CG AT AT |  G GT GT G  G CG         T AT       A  A AT       G  T GT       C  T GC       T  T CG        TG C  |       CG A  |       AT        AG TA        GT       C  G GT       T  G       GC GT       T  |       GT AT       T  |       GT CG       A  |      G  T |  A       GC       C  T G  C       CG        GC C  T      T  G       TA GT       T  G       TG GC        TG        GC CG        GC        GC                         TGTTTTGCTAAAAGTCGCTTGCTGGAGCGCTTTTGGACTGTGCGTTTTTTATATTTTTTGGCCTTCTGCGCATCCTGTTTCAATATCCGCTCGATGAATGTCTGCGCTTTTGTGCTGCCTTGCCTGAAAAGACCTGGCGCCAGGAAAAAAACCAATGTCAGACAGACCATGATGAATATTCGTGAAGGCCGGGAAAAAGACAACACCATG     ..................................................................................................................