                                                                        Gene putatively regulated by attenuation in B_suis_1330_I

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:35 nt.     Distance to run of Ts=0 nt.   Size=22 nt.     Delta G= -6.40 kcal/mol
Antiterminator: Size=24 nt.     Delta G= -5.14 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATGATGTTGAAACCGCCGAGGGCAGCCCACATGAGGAGGGGCGAAAAGATGTCGCCTT
TATCCGAGATGGACTGAATGACCCGTCCGAACAGGACAGGCTCGGCAAGGGTGACAAG
GGCAACCAGCACACTTGCGACACACATGGTTATCGTCGCGGTACGTTCGACCGCAAGA
TACTGCATGGCTCGCCAGTAGATTTTTAGCAACGACACtttcgcactcccgcgcgttctatttcacgggact
aaatggtatagcccgtttgttctatcaatatcgaatgatggcaagaagtggcgaATG

    BR0999 Gene: BR0999     GI: 23501880     BI number: BR0999     GOG: -------     Description: hypothetical protei ct         g t  a      t  g t  t      a  t g  t      a  a c  t       at g  c       ta c  a       cg gc       a  | cg        gc cg        gc cg        gc ta        cg             tttgttctatcaatatcgaatgatggcaagaagtggcgaATG     ..................................................................................................................