Gene putatively regulated by attenuation in B_suis_1330_I
Characteristics of the secondary structures
Terminator: Distance to gene:210 nt. Distance to run of Ts=1 nt. Size=34 nt. Delta G=-13.90 kcal/mol
Antiterminator: Size=38 nt. Delta G= -9.90 kcal/mol
Anti-antiterminator: Size=51 nt. Delta G= -6.71 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTTCAGCCAAATCTGCGCACCATATTTCCGCGACAGATAATCGTTGCGTTGCAATGGC
GTTTCGCAAAAGAGCGCGCGCATTGCCTTTTCTGCCTGGGCCACGGATTTGACGAAGG
GGGTCATcattcagctttctggattttcctgcaaaaattgccccaaggatatatggatttcggacaatagggaaaggTGGTGCGGTCG
GCGGGACTTGAACCCGCAAGTCTTAAAGACGACGGATTTTAAGTCCGTTGCGTATACC
AATTTCGCCACGACCGCagcaaacgcattttctatgtcATG
BR1050
Gene: BR1050 GI: 23501928 BI number: BR1050 GOG: ------- Description: hypothetical protei
t
t c
t t
ta
at
cg
gt
c c
a A TA
a | A A AA
aT G T C A
cG A C G A
gC CG CG
a C AT TA
C A GT TG
G T CG | C
C A GC TG
C T CG GC
A T C T CG
G T T T GC
C C T G | G
A C T C GC
C | A A TA
CG TA AT
GC AT AT
CG CG CG
TA CG GC
CTTTTCTGCCTGGGCCACGGATTTGACGAAGGGGGTCATcattcagctttctggattttcctgcaaaaattgccccaaggatatatggatttcggacaatagggaaaggTGGTGCGGTCGGCGGGACTTGAACCCGCAAGTCTTAAAGACGACGGATTTTAAGTCCGTTGCGTATACCAATTTCGCCACGACCGCagcaaacgcattttctatgtcATG
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