Gene putatively regulated by attenuation in B_suis_1330_I
Characteristics of the secondary structures
Terminator: Distance to gene:167 nt. Distance to run of Ts=2 nt. Size=22 nt. Delta G= -9.10 kcal/mol
Antiterminator: Size=42 nt. Delta G=-11.10 kcal/mol
Anti-antiterminator: Size=58 nt. Delta G=-26.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tgcacgccgcgaaggccggttttccctctggacagccataagaaaagccctgccgctcactgtatctttggcgcgcagggcttggggttgagcaaagctc
tcatgtcgacagtgcttcgtcgacaaattctttcggaaatcaatggcgcacagccatcttccttccgcgtgtgaggtaaattttcggcaatcgatatctt
gatcaacgatgcatcattccttgcgaaaagatgccgctacaatcaaatccgattgtgctttcgttcttacgaaagcgacataacctagtcaggtggactc
ATG
BR1103
Gene: BR1103 GI: 23501981 BI number: BR1103 GOG: ------- Description: hypothetical protei
ta
g t
t c
c t
a t
c t
tg
cg
gc
cg g
| c t a
cg tg
gc gc
ta g a
cg g |
cg g |
cg ta
gc ta
at cg
at gc
a g gt
a g gc gc
g | at t t
a | c c g t
a | g a a c
t | c | cg
a | gt at
cg cg gc
cg gt cg
gt gc ta
at tg gc
cg ta ta
aattctttcggaaatcaatggcgcacagccatcttccttccgcgtgtgaggtaaattttcggcaatcgatatcttgatcaacgatgcatcattccttgcgaaaagatgccgctacaatcaaatccgattgtgctttcgttcttacgaaagcgacataacctagtcaggtggactcATG
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