                                                                        Gene putatively regulated by attenuation in B_suis_1330_I

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:177 nt.     Distance to run of Ts=3 nt.   Size=18 nt.     Delta G= -6.00 kcal/mol
Antiterminator: Size=37 nt.     Delta G= -8.30 kcal/mol
Anti-antiterminator:   Size=54 nt.     Delta G= -5.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCCGATTTTCCGTTCCTATTCGCCGTTCGACCTGATCGTCGCCAATATTCTCGCCAAT
CCGCTTATCGAGCTTGCACCATCCATCAAGGAACATCTGGCGCCCGGCGGGTCCATCA
TTCTTTCCGGCATACTTGACAGCCAGCATGATGCAGTGCTCGCTGCCTATCAGACTCA
GGGACTCACCCATCAGAAAACCCTCCACCGTGAAGGATGGGTGGCAATTCATCTGAAA
TAAcgcttcatctgacataacaggccgtctgaacagcggcgccttcctgtttcgagcgagttatatccATG

    BR1418 Gene: BR1418     GI: 23502289     BI number: BR1418     GOG: COG0006     Description: aminopeptidase AT T  T A  C A  T C  C CG GC |  C |  A        C |  A      T  A C  T      A  A T  C       CG GC        CG CG        TA T  C      |  A AT       |  C GT       |  A TA       |  T C  |      |  C C  |       AT AT        CG         G GC        CG       G  C CG       A  C       CG TA        CG        CG TG        GC        CG GC       |  C       GT |  T      T  C      C  | C  T       TG        GC CG        CG        GC GC        GC        TA                         TCATTCTTTCCGGCATACTTGACAGCCAGCATGATGCAGTGCTCGCTGCCTATCAGACTCAGGGACTCACCCATCAGAAAACCCTCCACCGTGAAGGATGGGTGGCAATTCATCTGAAATAAcgcttcatctgacataacaggccgtctgaacagcggcgccttcctgtttcgagcgagttatatccATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG0006 Xaa-Pro aminopeptidase ... can be seen here     ..................................................................................................................