Gene putatively regulated by attenuation in B_suis_1330_II

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:153 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-12.20 kcal/mol
Antiterminator: Size=29 nt.     Delta G= -4.70 kcal/mol
Anti-antiterminator:   Size=50 nt.     Delta G= -8.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

aaattcgcatcacttgggagcctcgaaaatgccctcgtggtctgaccaCTAGGCGCTTTCATCAATTTTCGGATCACA
AACATGATTAACGACCTGACCGATGAGATATTCTGGGTGTTCACCATCGGGTGTTGCA
TCCTGTTTTTCTTGCGCCTGCTCTCCCCTCCCGGAGCAGAGAAATTTAAGTTGAAGGC
CGGCGACATTCCAGAGCCTCGCCGCCGTTTTCGCCGCCGCACTTTCAAGAGCCGGTTG
CATGCACGCCGCAGGCTCGAAATGAAATAAAGATTTTGCGCAAGCGATTTG

    BRA0002


Gene: BRA0002     GI: 23499769     BI number: BRA0002     GOG: -------     Description: hypothetical protei


 AA
A  C
C  A
 AT
 CG
 TA
 AT
 GT
|  A
|  A
 GC
 CG         T
 TA       C  G
|  C      T  G       TC
|  C       TG       A  G
T  T       AT        CG
 TG        TG        CG
 TA        AT        AT
A  C       GT        CG
A  C      |  C      |  T
 CG       |  A      T  T
 TA       A  C       TG
 AT        GC        GC
 CG        TA        TA
 TA        AT        GT
 TG        GC        GC
 TA        CG        GC
                        TGTTTTTCTTGCGCCTGCTCTCCCCTCCCGGAGCAGAGAAATTTAAGTTGAAGGCCGGCGACATTCCAGAGCCTCGCCGCCGTTTTCGCCGCCGCACTTTCAAGAGCCGGTTGCATGCACGCCGCAGGCTCGAAATGAAATAAAGATTTTGCGCAAGCGATTTG
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