                                                                        Gene putatively regulated by attenuation in B_suis_1330_II

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:180 nt.     Distance to run of Ts=1 nt.   Size=36 nt.     Delta G= -9.50 kcal/mol
Antiterminator: Size=41 nt.     Delta G= -9.00 kcal/mol
Anti-antiterminator:   Size=31 nt.     Delta G= -5.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGATGAGCGAGATGGCGGTGGCCCAGCTCAACCGTCCGGGTGGCACAGACTGGTTTAT
GAACCGTGTGATGATGAAGCGCATCGGCGAAACCAGCGAAGTCGTCGATCCCGTCGTT
TTTCTCGCGTCCCCGATGGCAAGCTATATCACCGGCACCATCCTGCCGGTGGATGGCG
GCTTCCTGGCCGCGTGAccttatcctgcgcatttggcagcggccaaatgcagtgaaaacaaacagatagagcggcccagccttccttg
aaccgctctggagagcccttgctcctggagattgtcctATG

    BRA0032 --- BRA0033 Gene: BRA0032     GI: 23499799     BI number: BRA0032     GOG: COG0022,COG1071     Description: acetoin dehydrogenase, alpha/beta subunit, putative Gene: BRA0033     GI: 23499800     BI number: BRA0033     GOG: COG0508     Description: acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase, putativ             T           A  G           G  A           T  A           A  G        G AT        GC       A  C T  G       TG       C  G TA        GC       C  A TA        TA       A  A GC       |  T      A  G GC        GC        AT T  |       CG        GC C  |       CG        CG A  |      A  C       GT G  |      A  G       GC A  |      G  |       CG CG       T  |       TA AT       A  |       AT CG        TA       |  C GT        TA       C  C G  G       TA        GC TA        GC        CG GT        GC        GT                         CGTTTTTCTCGCGTCCCCGATGGCAAGCTATATCACCGGCACCATCCTGCCGGTGGATGGCGGCTTCCTGGCCGCGTGAccttatcctgcgcatttggcagcggccaaatgcagtgaaaacaaacagatagagcggcccagccttccttgaaccgctctggagagcccttgctcctggagattgtcctATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit ... can be seen here [C] COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit ... can be seen here [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes ... can be seen here     ..................................................................................................................