Gene putatively regulated by attenuation in B_suis_1330_II
Characteristics of the secondary structures
Terminator: Distance to gene:64 nt. Distance to run of Ts=2 nt. Size=25 nt. Delta G= -6.40 kcal/mol
Antiterminator: Size=33 nt. Delta G= -3.90 kcal/mol
Anti-antiterminator: Size=65 nt. Delta G= -5.83 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tcagggcgggtgccgttgctttcacgggaactaaaatgtgaaagtctcaatttggtttcaacgataaatgcagttgactgcccaaattgggtcttttttt
cacaactgttgttttcgcgctcaggccactcttcgggaaagcgcaatatccacaccctataaatacagaagaattctccaggcaatattcgatcagcccc
gacagattaagcccaaaatgggcactgactttgtttaccgcacggaatttcttactgaggataagcgtcccggcgtgatattagcgcaataagctcggca
TTG
BRA0337
Gene: BRA0337 GI: 23500092 BI number: BRA0337 GOG: ------- Description: hypothetical protei
a
a t
c a
g t
c c
g c
a a
a c
a a
gc
gc
gc
| t
| a
| t
| a
| a
| a
| t
| a
| c
| a
cg cc
ta g c
ta a c a
cg cg a a
ta ta a t
| a a c cg
c t g a cg
a t cg cg
c c ta gc
c t t t a a
gc a t a |
gc t a t |
a a a a t |
c | a | a |
tg cg gc
cg gc at
gc gc cg
actttgtttaccgcacggaatttcttactgaggataagcgtcccggcgtgatattagcgcaataagctcggcaTTG
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