Gene putatively regulated by attenuation in B_suis_1330_II
Characteristics of the secondary structures
Terminator: Distance to gene:42 nt. Distance to run of Ts=0 nt. Size=40 nt. Delta G=-15.97 kcal/mol
Antiterminator: Size=43 nt. Delta G= -9.90 kcal/mol
Anti-antiterminator: Size=57 nt. Delta G=-17.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
agctggcgtgatgatgtctatgcttttgatggcaaggactggaaggtggccggcaagctgccgcgcggtctggcctatggcgcagccttcgatgcgccgg
gcggtcttctggtcgtgggcggtgaagatagagacggcaaggcccgcaaggaggttttcctcctcaaatgggatggcaaggccctctcggtcgaaaactg
acttcgcagtggaaagagcgcttccatcgataccatttaaaccggaagcgttcttttttgaaagcttggcgacgatgcttctttgcgttattgttccaaa
ATG
BRA0413
Gene: BRA0413 GI: 23500164 BI number: BRA0413 GOG: ------- Description: hypothetical protei
a
a g
cg
gc
gc
t c
at
gc
gt tt
gc c c
t | a g
a | gc
a | ta ca
a | cg c t
c | at a t
t | a g t t
cg a | a a
cg a | g a
t t g | c a
c c cg t c
cg ta a c
ta g a cg
ta g | cg
ta c | ta
ta ta ta
gc cg cg
gt ta gc
a g cg cg
g a c c gt
gc cg at
at gc gc
at gt at
tttttgaaagcttggcgacgatgcttctttgcgttattgttccaaaATG
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