                                                                        Gene putatively regulated by attenuation in B_suis_1330_II

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:112 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-19.50 kcal/mol
Antiterminator: Size=42 nt.     Delta G= -7.40 kcal/mol
Anti-antiterminator:   Size=46 nt.     Delta G=-19.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AGCAGCTTTTCGACGAACTTCTGGCCGATGAAGAAGGCCATATCGACTTCCTTGAAAC
CCAGCTCGACCTTCTCGCCAAGATCGGCGAAGAACGCTATGGCCAGCTTAACGCGGCG
CCCGCCGACGAAGCTGAGTAAgcctgtttcaatctgtcttgaaagccggggcgcatcgctccggctttttctttggcagcatttt
caaaccgctgcgacaccgcaaaagcgccatccaatctttacctccgcccccttgttgtgataaggcgcgcgcaattttcccaattcgtaaggtattacaA
TG

    BRA0566 Gene: BRA0566     GI: 23500310     BI number: BRA0566     GOG: COG0621     Description: conserved hypothetical protein TIGR0112 CC G  C CG        tg GC       c  t GC       t  c CG        at G  A       at C  C       cg A  G       ta A  |       ta TA        ta TA       |  g        a CG       |  c      c  t GC       |  c       gc AT       g  g       cg CG        tg        gc |  A       cg        gt CG        cg        gc GT        gc        gc G  A      A  g       cg T  |      A  c       cg A  |      T  a       gc TA       G  |       at Cg        At        at Gc        Gc        at                         ttctttggcagcattttcaaaccgctgcgacaccgcaaaagcgccatccaatctttacctccgcccccttgttgtgataaggcgcgcgcaattttcccaattcgtaaggtattacaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG0621 2-methylthioadenine synthetase ... can be seen here     ..................................................................................................................