Gene putatively regulated by attenuation in B_suis_1330_II
Characteristics of the secondary structures
Terminator: Distance to gene:51 nt. Distance to run of Ts=1 nt. Size=29 nt. Delta G= -9.52 kcal/mol
Antiterminator: Size=23 nt. Delta G= -5.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tggatcggccactatgcagtgggcattctctacggtgtgatctttgcgcttttgtgatctttgcgctttatggcggcgcggcatggtttgcgaacccaat
cttccttcccgcatggatatttggcatattgaccattgcggctggctggttcctgctgcaaccgggccttggaattggctgggcagcctcgaaattaccg
aatgcgggaaatgtgcgtattctcaatctcattgcgcacacatttttttcgctcggcatgtacggaacggcactgattcttttaaatacagtatagtcaa
ATG
BRA0662
Gene: BRA0662 GI: 23500406 BI number: BRA0662 GOG: ------- Description: hypothetical protei
a
a t
c c
a t t
a t c c
a g t a
g t t t
g g at
gc tg
cg gc
gt cg
ta gc
at ta
at gc
gc ta
catttttttcgctcggcatgtacggaacggcactgattcttttaaatacagtatagtcaaATG
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