Gene putatively regulated by attenuation in B_suis_1330_II
Characteristics of the secondary structures
Terminator: Distance to gene:84 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G=-12.20 kcal/mol
Antiterminator: Size=49 nt. Delta G= -7.60 kcal/mol
Anti-antiterminator: Size=42 nt. Delta G= -7.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCAATCATTGGCGGCGCAATCAGCCAGCCGCGCCCGGTTTACCGAGCACCCGCAGGTT
CACCCCATGTGCAATGGTGCTATAGCCGCTATAAGTCCTATCGGGCATCAGACAATAC
ATTCCAGCCCTATAACGGGCCACGCAAGCAGTGCCGTTCGCCTTATTCTCGTTAAttac
agcataaaccagaaaagcgcccatggaggcgctttctttttctattctggtggtctgattccgacatttgcatccctctgttcaagcgttgagcaaatgt
ttggaatcataccactagcaagcatATG
BRA0736
Gene: BRA0736 GI: 23500473 BI number: BRA0736 GOG: ------- Description: hypothetical protei
A
A t
T t
Ta
TG Gc
G C C |
A C Ta
CG Cg
GT T c
AT Ta
A C At
CG Ta
GC Ta tg
| C | a a g
| T C c c a
C T C c cg
A A G a cg
C T Cg gc
C T Ta cg
GC Ta gc
GT G a a |
GC C a at
CG Cg at
AT Gc at
AT Tg gc
TA Gc at
ttttctattctggtggtctgattccgacatttgcatccctctgttcaagcgttgagcaaatgtttggaatcataccactagcaagcatATG
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