Gene putatively regulated by attenuation in B_suis_1330_II
Characteristics of the secondary structures
Terminator: Distance to gene:64 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G=-11.90 kcal/mol
Antiterminator: Size=44 nt. Delta G= -5.36 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTCGAGGGTTCGAATCCCTTCGCCCGCTCCAgttttccgTTAAGTATAGGCAACAAAATCC
CGGCTTCGTCCGGGATTTTTGCTTTTCAGGACCAGTAAAATCGCAGCCGCAATAGGTT
GCATTGCGGAGCGGCGGAATGCGCAAGAGCAGCAAGCAGGCTGCGGCCCGCTCGGAAA
TCGGATCGAATTAACGCAAAAAAATTGCCCGACGCATATCAATTCGGCATCGGGCTTA
TTTGCGCTATCGCAAACAAGCCGAAGCATGTTTATCATAGGGTATTCTCTTGACGGAG
AAATATGATG
BRA0897
Gene: BRA0897 GI: 23500624 BI number: BRA0897 GOG: ------- Description: hypothetical protei
A
A A
A A
AT
AT
CG
GC
C |
A |
A |
T |
T |
A |
A |
G |
C |
T |
A | A
G | C A
G | T T
C | A T
T | T C
A | A G
A | CG
A | GC
GC C A
GC AT
CG GC
TA CG
| C CG
CG CG
GC GC
TTATTTGCGCTATCGCAAACAAGCCGAAGCATGTTTATCATAGGGTATTCTCTTGACGGAGAAATATGATG
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