                                                                        Gene putatively regulated by attenuation in B_aphidicola_Sg

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:163 nt.     Distance to run of Ts=1 nt.   Size=30 nt.     Delta G=-11.40 kcal/mol
Antiterminator: Size=73 nt.     Delta G= -3.61 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATTGAAAGTTTAAATTTAAGACGATAAatagtttttttaaagaattataagattaaaaaatatttaaaaattttaaatta
atagataaaaaattttttaattaagggctttttttagcccttttttacattttttcttatattttaattaaaaatgcattaattaacaatttttttaaaa
aattaaaaaaatttatatttataatttgtagatcaaatactatattgatttataaaaataatgtttaatattaaaagtttataatgaatagaaaattagt
cttatattaaggatattattTTG

    pnp Gene: pnp     GI: 21672636     BI number: BUsg361     GOG: COG1185     Description: polyribonucleotide nucleotidyltransferas   a a  t at at at ta ta ta at |  t |  a |  a |  t |  a |  g |  a |  t |  a |  a |  a |  a |  a ta at at at at at at ta ta        tt at       t  t gt       t  t a  a       ta a  |       cg t  |       gc a  |       gc ta        gc tg        at a  g       at a  g      t  t gc       t  t at        at at        at at        ta             cattttttcttatattttaattaaaaatgcattaattaacaatttttttaaaaaattaaaaaaatttatatttataatttgtagatcaaatactatattgatttataaaaataatgtttaatattaaaagtttataatgaatagaaaattagtcttatattaaggatattattTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_aphidicola_Sg                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:175 nt.     Distance to run of Ts=0 nt.   Size=18 nt.     Delta G= -9.10 kcal/mol Antiterminator: Size=73 nt.     Delta G= -3.61 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case ATTGAAAGTTTAAATTTAAGACGATAAatagtttttttaaagaattataagattaaaaaatatttaaaaattttaaatta atagataaaaaattttttaattaagggctttttttagcccttttttacattttttcttatattttaattaaaaatgcattaattaacaatttttttaaaa aattaaaaaaatttatatttataatttgtagatcaaatactatattgatttataaaaataatgtttaatattaaaagtttataatgaatagaaaattagt cttatattaaggatattattTTG     pnp Gene: pnp     GI: 21672636     BI number: BUsg361     GOG: COG1185     Description: polyribonucleotide nucleotidyltransferas   t t  t tt at aa aa at at aa |  a |  g |  g |  g |  c |  t |  t |  t |  t |  t | | | t a g a t a a t t a a a t  | t  | t  |       tt t       t  t a       t  t a         ta a         cg a        gc a        gc t        gc t        at             tttttacattttttcttatattttaattaaaaatgcattaattaacaatttttttaaaaaattaaaaaaatttatatttataatttgtagatcaaatactatattgatttataaaaataatgtttaatattaaaagtttataatgaatagaaaattagtcttatattaaggatattattTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) ... can be seen here     ..................................................................................................................