Gene putatively regulated by attenuation in B_aphidicola_Sg

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:131 nt.     Distance to run of Ts=2 nt.   Size=26 nt.     Delta G= -9.70 kcal/mol
Antiterminator: Size=72 nt.     Delta G= -6.95 kcal/mol
Anti-antiterminator:   Size=52 nt.     Delta G= -3.06 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAAATATTATGATCCTAGATCATGGATAAGAGAATCTCAAGAATCAATGTCTAAAAGA
TTAGAAAAAACATTTAAGGATCTTAATGCTTTTAATATTTTATAAaaaaaaataaagaaattttata
tttaagtccggggaataaataaaaatattctccgaaattttttaaaacatctatcttatataatctataaaaatgtttcatcacaattaatttaataatt
tttaaaaaaatattaattaaaataatctgaatttcttaagaattatttaaatcaaaaaaataaatagagataaaaATG

    yggB


Gene: yggB     GI: 21672702     BI number: BUsg437     GOG: COG0668     Description: hypothetical 30.9 kDa protei


           aa
          a  a
          A  a
          A  a
           Ta
           At
           Ta
           Ta
           Ta
  T        Tg
A  T      A  a
C  T      T  a
A  A      A  a
A  A      A  t
A  G      T  t
A  G      T  t
A  A      T  t
 AT       T  a
 GC       C  t
|  T      G  a
 AT       T  t
 TA        At
 TA        At
 AT        Ta
|  G       Ta        aa
 GC        Cg       t  a
 AT       T  |      a  a
 AT        At       a  a
 AT        Gc        at
 AT        Gc        ta
 TA       |  g       at
C  |      A  g       at
 TA       A  g       gc
 GT        Tg        gt
 TA        Ta        gc
 AT        Ta        gc
 AT        At        cg
                        aaattttttaaaacatctatcttatataatctataaaaatgtttcatcacaattaatttaataatttttaaaaaaatattaattaaaataatctgaatttcttaagaattatttaaatcaaaaaaataaatagagataaaaATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[M] COG0668 Small-conductance mechanosensitive channel ... can be seen here

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