                                                                        Gene putatively regulated by attenuation in Buchnera_sp

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:166 nt.     Distance to run of Ts=3 nt.   Size=32 nt.     Delta G=-11.10 kcal/mol
Antiterminator: Size=76 nt.     Delta G= -6.53 kcal/mol
Anti-antiterminator:   Size=24 nt.     Delta G= -4.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

atagcttacgaatgaaataataaaacattgttattcctttttgatatagaataaaatcatatacaataatattgtaaaaaactctatacatgtaaaatga
gaataattttattttacgtgctatctttttttaaagatattatttttttttgaaaaattgataacttttctatttatgttatatttttataaaagatttt
ataatagtattattatattctataacgtcactaggatgatatagtatgttatatagtttttttatattaaaaaagtagattaaaaaagataaagaatact
ATG

    pncB Gene: pncB     GI: 15616966     BI number: BU361     GOG: COG1488     Description: nicotinate phosphoribosyltransferas             a           a  t            ta            at            at            cg            at            ta           a  a           t  a           a  a           c  a           t  a           a  c           a  |           a  |           a  |           t  |           a  |            at            gc            at            ta            at            ta           |  c           |  a           |  t       ta           a  g      a  a            gt        at            ta        gt ct        ta        at c  t       ta        gt t  t       ta        ta t  t      |  t       at at       t  g       at tg       c  a       at ta        cg        at Gt        ta        ta Ta        ta        gc At        at        tg ta        ta        at cg        ta        cg                         ctatctttttttaaagatattatttttttttgaaaaattgataacttttctatttatgttatatttttataaaagattttataatagtattattatattctataacgtcactaggatgatatagtatgttatatagtttttttatattaaaaaagtagattaaaaaagataaagaatactATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [H] COG1488 Nicotinic acid phosphoribosyltransferase ... can be seen here     ..................................................................................................................