Gene putatively regulated by attenuation in Buchnera_sp

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:197 nt.     Distance to run of Ts=0 nt.   Size=22 nt.     Delta G=-12.80 kcal/mol
Antiterminator: Size=21 nt.     Delta G= -3.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

aaagtaataatatttttctatatttcagagataaaaaattattaataataactttatacatagggtaatagcacctaaaaccccgacttttcggggtttt
ttattacaatgtttcttctaaataatatagtttaattgatctttaaatattaagtaataattaattatacaaactcttgattaataaaaattagtgtatt
aattatctaatttcataattaatttttttttcaattaatacatgtaaaaaatgagttgtaattattcattttaaaaatttttattttgaggttccataag
ATG

    nusA --- infB


Gene: nusA     GI: 15616983     BI number: BU378     GOG: COG0195     Description: N utilization substance protein A
Gene: infB     GI: 15616982     BI number: BU377     GOG: COG0532     Description: translation initiation factor IF-


  a        tt
c  c      c  t
 gc        at
 at        gc
 ta        cg
a  a       cg
a  a       cg
 ta        cg
 gc        at
 gc        at
 gc        at
            tttattacaatgtttcttctaaataatatagtttaattgatctttaaatattaagtaataattaattatacaaactcttgattaataaaaattagtgtattaattatctaatttcataattaatttttttttcaattaatacatgtaaaaaatgagttgtaattattcattttaaaaatttttattttgaggttccataagATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[K] COG0195 Transcription elongation factor ... can be seen here
[J] COG0532 Translation initiation factor 2 (IF-2; GTPase) ... can be seen here

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