                                                                        Gene putatively regulated by attenuation in C_jejuni

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:129 nt.     Distance to run of Ts=0 nt.   Size=16 nt.     Delta G= -6.80 kcal/mol
Antiterminator: Size=47 nt.     Delta G= -5.50 kcal/mol
Anti-antiterminator:   Size=38 nt.     Delta G= -6.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAATTCTTTTAATAGCCCCTTTTATTTCATCATCAAAGCTAGGCCATCCGCAACCTGA
TTTAAATTTATCTTCGGATTTATAAAGCGAAGCTCCACATTGCTTGCATTGATAGATT
CCTTTTTCATAAAAATCATTATATTTCCCACTAAAAGGAGCTTCTGTTCCTTTATTTA
AAATTACTTTTTTTTCTTCTTCATTTAATTCTTTCATgatctgcccttgtaaaataatttttatattatataa
ttaaaatttcaattttaaatgataaatttttataattttcaagaaagttttaaATG

    Cj1113 Gene: Cj1113     GI: 15792438     BI number: Cj1113     GOG: COG2833     Description: hypothetical protein Cj111            TT           A  A           C  T            TA AC        AT C  A       AT C  T       AT T  T      A  C CG       A  C GC       T  C AT       A  A AT       C  C G  |      T  T CG        TA GC        TA |  A       TA A  T       TA        TC A  T       CG       T  T A  G       CG        CG TA        TA        GT AT        TG        AT TA       A  |       GC TG        GC        GC TA        AT        AT                         TTATTTAAAATTACTTTTTTTTCTTCTTCATTTAATTCTTTCATgatctgcccttgtaaaataatttttatattatataattaaaatttcaattttaaatgataaatttttataattttcaagaaagttttaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG2833 Uncharacterized protein conserved in bacteria ... can be seen here     ..................................................................................................................