Gene putatively regulated by attenuation in C_jejuni

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:185 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-14.00 kcal/mol
Antiterminator: Size=39 nt.     Delta G= -3.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAGAAGGAACTCGTTTTGCTATTCGTGAAGGTGGTAAAACTGTTGGTTCAGGTGTTGT
TTCTAAAATTATTAAATAAtttaataaagccaagttaaaagcttggctttaattttttaaggaaaattgaaATGAGAATT
AAAGTTGGTTTAAAGTGTGAAGAATGTGGTGATATTAATTATAGCACCTATAAAAATA
GTAAAAATACTACTGAAAAATTAGAATTAAAAAAATATTGCCCAAGATTAAAAAAACA
TACACTTCACAAAGAAGTTAAGCTAAAAAGTTAAgcttgcgcccttAGG

    Gly


Gene: tRNA-Trp     GI: Cjp09     BI number: Cjp09     GOG: -------     Description: tRNA-Tr


  A
T  A
 TA
 AT
 TA
 TA
 At
 At
 At         a
A  |      a  a
T  |      t  a
C  |       tg
T  |       gc
 Ta        at
 Ta        at
 Gt        cg
 Ta        cg
 Ta        gc
G  a       at
 Tg        at
 Gc        at
 Gc        ta
            attttttaaggaaaattgaaATGAGAATTAAAGTTGGTTTAAAGTGTGAAGAATGTGGTGATATTAATTATAGCACCTATAAAAATAGTAAAAATACTACTGAAAAATTAGAATTAAAAAAATATTGCCCAAGATTAAAAAAACATACACTTCACAAAGAAGTTAAGCTAAAAAGTTAAgcttgcgcccttAGG
    ..................................................................................................................