Gene putatively regulated by attenuation in C_crescentus
Characteristics of the secondary structures
Terminator: Distance to gene:76 nt. Distance to run of Ts=0 nt. Size=30 nt. Delta G=-24.30 kcal/mol
Antiterminator: Size=49 nt. Delta G=-11.40 kcal/mol
Anti-antiterminator: Size=55 nt. Delta G=-13.99 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCCCTGGTCGACGAGGCGACGATCGCCGCGCGCAAGCAGGACGGCATCCCGGCGGTTC
CCGCCACCATGACGCCCTGGCAGGAAATCTACCGCGCCCACGCCAGTCAGCTCGACAC
CGGCGGCGTGCTGGAGTTCGCGGTCAAGTACCAGGACCTGGCGGCCAAGCTGCCCCGC
CACAACCACTGAtgcgaagggccttcggagcgatccggaggcccttttctttgcgccccccggatcgcccgcccccgcttcacaacaccca
gccgaatcgcattttctccgtcgccaaacgctgaaATG
CC0818
Gene: CC0818 GI: 16125071 BI number: CC0818 GOG: ------- Description: hypothetical protei
A
C A
CG
GC
GT
CG
GC
GC
T | C
C | C A
C | A C
A | AT
G | CG
G | A A
A | C t
C | Cg
C | Gc
A | Cg
T | | a
G | | a
A | Cg
A | Cg cg
C | Cg g a
T | Gc at
GC T | gc
GC C | gc
CG Gc cg
GC At tg
C C At ta
T A | c cg
T C Cg cg
G A Cg gc
A A | a gc
GC G g gc
GC Gc at
TA Cg at
ttctttgcgccccccggatcgcccgcccccgcttcacaacacccagccgaatcgcattttctccgtcgccaaacgctgaaATG
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