Gene putatively regulated by attenuation in C_crescentus
Characteristics of the secondary structures
Terminator: Distance to gene:9 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-23.20 kcal/mol
Antiterminator: Size=46 nt. Delta G= -8.10 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G=-19.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GAGGAACTGCAGGCGCGCCTGTTGGCCTATGTCGGCTACACCCCGGTGCAGAACGTGG
CCGGCGCCCCGGCCATGAGCGTGCCGCTGCACTGGACGGCCGATGGCCTGCCGGTCGG
CGTACAGTTCGCCGGTCGCGCAGGCGATGAGGCGACCCTGTTCGCCCTAGCCTATCAG
CTGGAGGCCGCCGCGCCCTGGGCGCACCGCAAGCCGCCGGTGAGCGCTTAAgccgggtcaga
gatcatctgacggacacaaagaaggagcgcccagcgatagccgggcgctccttttgtctttcccGTG
CC1322
Gene: CC1322 GI: 16125571 BI number: CC1322 GOG: ------- Description: hypothetical protei
t
a c
g a
at
gc
at
cg
G | a
A C | c
A C | g
CG | g
GC | a
| C | c
CG | a
CG | c
AT | a
| G | a
| A | a
CG | g
GC | a at
CG | a g a
GC | g cg
GT | g gc
GT | a a c
TA | g cg
C A | c cg
C | tg cg
Cg gc gc
Gc gc cg
C | gc gc
Gc c a at
Cg cg gc
Cg gc gc
ttttgtctttcccGTG
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