Gene putatively regulated by attenuation in C_crescentus
Characteristics of the secondary structures
Terminator: Distance to gene:149 nt. Distance to run of Ts=0 nt. Size=36 nt. Delta G=-18.70 kcal/mol
Antiterminator: Size=43 nt. Delta G=-22.40 kcal/mol
Anti-antiterminator: Size=53 nt. Delta G=-20.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTGGAGGAGCGCACATCGAAGAGGCTGGAGCGATCGCTCATatcgtcagatctcggacttttccggcggg
ccgggctctctccgcgcgcgtcttccgtcggggggccttttcgcttgccgatgggttcgctagggaaccggcaggcgtcttttggcgcttcgcgacggat
gataccggcgtggagagccgccggtgtctctacagtaaaacttcgatcacaaattcgctaccggaaatcacgcggatttcgcagttgcgagaagatttcg
tgacgccgcaggccaaagtgatcgcgcgtcGTG
CC2017
Gene: CC2017 GI: 16126260 BI number: CC2017 GOG: ------- Description: hypothetical protei
c
t t
c c
t c
cg
gc
g g
gc
cg tt
| c t t
cg c c ta
gt cg c g
| c gc g g
| t gt cg
| t gt ta
gc g g ta
gc gc gc
cg gc gc
gt cg g |
gc ta t |
cg gt a |
cg cg g |
t g cg cg
t g tg cg
tg t t gc
tg c t ta
c | t | tg
a | gc cg
gc cg gc
gc gc cg
tcttttggcgcttcgcgacggatgataccggcgtggagagccgccggtgtctctacagtaaaacttcgatcacaaattcgctaccggaaatcacgcggatttcgcagttgcgagaagatttcgtgacgccgcaggccaaagtgatcgcgcgtcGTG
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