Gene putatively regulated by attenuation in C_muridarum
Characteristics of the secondary structures
Terminator: Distance to gene:133 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G= -6.80 kcal/mol
Antiterminator: Size=39 nt. Delta G= -5.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
agttatgtggttgatatcaatgaccgcggtgggtctccaaggaaaagccctatagttgagtgttttcaagaagtaaacactcttgagttttcggtgctct
cgagagactcgaccagcttcatcctaycatgatttttcgttaggggcaagggtccttgcaagatcttttcattctaagtwgagaaggtgatgttaagatt
tttatttaatctatggctaaaaatgaagcttttattaactacttagttaataagatttgtgttataatattacaaatttatttttaatttagtaggtttt
ATG
TC0107
Gene: TC0107 GI: 15834732 BI number: TC0107 GOG: NOG05885 Description: conserved hypothetical protei
tt
t t
at
gc
tg
at
c |
y |
at
ta ag
cg a g
cg cg
t | gt
a | gc
c | gc
t | gt
tg at
cg tg
gc | c
| a t a
a a g a
cg cg
cg ta
tcttttcattctaagtwgagaaggtgatgttaagatttttatttaatctatggctaaaaatgaagcttttattaactacttagttaataagatttgtgttataatattacaaatttatttttaatttagtaggttttATG
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