Gene putatively regulated by attenuation in C_muridarum
Characteristics of the secondary structures
Terminator: Distance to gene:187 nt. Distance to run of Ts=0 nt. Size=21 nt. Delta G= -7.30 kcal/mol
Antiterminator: Size=42 nt. Delta G= -8.80 kcal/mol
Anti-antiterminator: Size=58 nt. Delta G=-13.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
agctgctttgtctgtttactaatgatgctcaacccgctaggaggattgatctcgggatgcctggggtatttattagctaaaagaaagaaccgcggagcaa
ttcgttggttttttgctacgttgttcttcggactaatagccggtatcttccttgttgcacttcgtcctaaccccaaaaaaaactaggtagctttcttatt
tcttaagaaattttaataagacaaaatttttttagtgagaaaagctgctcttagaaataatgtggttatttacaacaaaattgagtttggcagacttctc
ATG
TC0171
Gene: TC0171 GI: 15834791 BI number: TC0171 GOG: NOG07066 Description: conserved hypothetical protei
t
a t
g g
g a
at
gc
gt
a |
t |
c |
gc
cg
cg ct
cg g a
| a a a
| t ta
| g ta
| c a g
| c ta
a t ta
a g ta
cg | g
tg a a
cg ta ca
gt gc g a
ta gc at
| t g g gt
at gc gc
gt tg cg
ta cg | t
at | a gt
at cg cg
ta gc cg
cg ta at
tttttgctacgttgttcttcggactaatagccggtatcttccttgttgcacttcgtcctaaccccaaaaaaaactaggtagctttcttatttcttaagaaattttaataagacaaaatttttttagtgagaaaagctgctcttagaaataatgtggttatttacaacaaaattgagtttggcagacttctcATG
..................................................................................................................