                                                                        Gene putatively regulated by attenuation in C_muridarum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:152 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-19.30 kcal/mol
Antiterminator: Size=47 nt.     Delta G=-10.20 kcal/mol
Anti-antiterminator:   Size=42 nt.     Delta G=-11.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAGTAACAGCATTTTGTGGAGGATTTTCTTCTATGGATAATAAACTAGGATACGAAGC
GAATGCTGGAATGCGTTTGATTTTCTAGtcgataagaggCTATACAAAATCCTGGTCCCTAA
TCTCTAGAGTGAGATTAGGGATTTTTTTTGCCCCAACAAGATTAAAGAAAATATTTTC
TAATTGTTTAGACAATAAGTTGATTAGAGAGTAAAAACTTTCCTGGTTTTTAATAAAA
TTGTTCAGAGGCTTGTCTAAGCTTGTTTTATCCATctgaatgatgattctttaaaggtgatctaATG

    TC0199 Gene: TC0199     GI: 15834819     BI number: TC0199     GOG: NOG12656     Description: hypothetical protei            AA GA       A  A G  A      C  T T  T      A  C CG       T  C GC        AT TG        TG AT        CG AT        gT        GA GT        gC       A  G CG       a  C      T  T G  A       gC        CG A  T       aT        TA A  T      a  A       CG G  |       tA        TA C  |       aT        AT A  |       gC        AT T  |      c  T       TA AT       t  |       CG GT        GC        CG GC        AT        CG AT        TA        TA TA        CG        GT CG        TA        GT                         TTTTTTGCCCCAACAAGATTAAAGAAAATATTTTCTAATTGTTTAGACAATAAGTTGATTAGAGAGTAAAAACTTTCCTGGTTTTTAATAAAATTGTTCAGAGGCTTGTCTAAGCTTGTTTTATCCATctgaatgatgattctttaaaggtgatctaATG     ..................................................................................................................