                                                                        Gene putatively regulated by attenuation in C_muridarum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:164 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G= -8.80 kcal/mol
Antiterminator: Size=33 nt.     Delta G= -4.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

atcctgtgacaattgtcccctcattgtatctacggatagattaagcttaagcttacaaaaactaaagggactttagaaagcgtacgttcaatacatagta
gaacgagggagcacgagcttgcgccttcttattttcttgtcagttgcaacttgatgtgtcaagaaatcttgagaaaggatgcctcactcctcgataagaa
agtttagcctaacagcaagtattcttatcgcggctctaatcgtttactaacaaacctgctcatgttaagttaaaaaaaacagtacaaaggagattccctc
ATG

    TC0313 Gene: TC0313     GI: 15834933     BI number: TC0313     GOG: NOG04984     Description: conserved hypothetical protei   a c  t a  a tg at a  a cg        ag ta       g  c ta       c  t gc        at cg        cg |  a       gc |  g      a  g a  g       gc t  g       gc g  a       gt cg        at gc        gc             ttattttcttgtcagttgcaacttgatgtgtcaagaaatcttgagaaaggatgcctcactcctcgataagaaagtttagcctaacagcaagtattcttatcgcggctctaatcgtttactaacaaacctgctcatgttaagttaaaaaaaacagtacaaaggagattccctcATG     ..................................................................................................................