                                                                        Gene putatively regulated by attenuation in C_muridarum

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:59 nt.    Distance to gene:34 nt.     Distance to run of Ts=2 nt.   Size=36 nt.     Delta G=-10.10 kcal/mol
Antiterminator:    Distance from promoter:32 nt. Size=49 nt.     Delta G=-10.40 kcal/mol
Anti-antiterminator:    Distance from promoter:33 nt.    Size=22 nt.     Delta G= -7.40 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: ttgtcg-taacct. It has a score value of 67.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ttgtcgagtatatgatttatatgctaaccttctgagctcctactttcttgatCGGAGTATAGCGCAGCCTGGTTAGCGCG
GTTGCTTTGGGAGCAATAGGTCGGGGGTTCGAATCCCTCTACTCCGAtttcttaataattcaaca
ttattttccttctggagatcttATG

    TC0329 Gene: TC0329     GI: 15834949     BI number: TC0329     GOG: COG0633     Description: ferredoxi             G           T  G            TG            TA            CG            GC            TA        CG            TA       T  A            GT        TA           G  A       GT           C  G       GC           G  |       GC            CG        GC            GT        GT           A  C      C  |   T       T  G      T  | T  A      T  G      G  | G  G      G  |       GC GC       G  |       AT TG        TG        TA |  C       CG       A  | CG        CG       A  | CG        GT       C  | GT        AT        GC AT       C  |       AT CG        GC        GC GC        CG        GC                         GAtttcttaataattcaacattattttccttctggagatcttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG0633 Ferredoxin ... can be seen here     ..................................................................................................................